eUTOPIA: solUTion for Omics data PreprocessIng and Analysis

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LOAD PHENOTYPE DATA

LOAD RAW DATA

Raw Data Files (Multiple)

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Source Image Analysis Program

Select Annotation

QUALITY CONTROL

Multithreaded

PROBE FILTERING

Quantile Based Cutoff

P.value detection threshold

Percentage of Samples

NORMALIZATION

Remove SNPs

Remove Sex Chromosomes

BATCH CORRECTION

Correction With

ANNOTATION

Select Annotation Type

DIFFERENTIAL ANALYSIS

Limma Model

Keep NA Variables

REPORTING

Export Expression Matrix

Filtered

Normalized

Corrected

Aggregated

Select rows from the table to remove unwanted samples.

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Before Correction
After Correction

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Before Correction
After Correction

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LogFC Threshold

P.Value Threshold

P.Value Type

Export Differential Tables

Export Unfiltered Tables

Venn Representation

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UpSet Representation

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X Axis Bounds

Y Axis Bounds

Display Names

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Box Plot
Heatmap

Select Features

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Percentage of Highly Differential Features

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Select Annotation

Limma Model

Export Expression Matrix

Import Phenotype Data

Import Annotation

Import Annotation

Configure and Run SVA

Configure and Run ComBat

Upload Raw

Download QC Report

Download Analysis Report

Illumina Methylation QC Report

Venn Representation

UpSet Representation